The researchers demonstrated that there were considerable differences in gene expression in the intestine, brain and placenta of the foetuses of germ-free and normal mouse dams. In the gut, genes associated with the immune system and host-microbe interactions were less active in the foetuses of germ-free dams. There were significant differences in the expression of genes in the brain associated with the development and functioning of the nervous system. In the placenta, there were differences in the expression of several important genes that regulate pregnancy. The differences were more extensive in male foetuses, indicating that they may be more sensitive to the effects of the maternal microbiota, at least in mice.